circRNA basic information
circBase ID: hsa_circ_0001522
Name: hsa_circ_CSNK1G3
Synonym: circCSNK1G3
Host Gene: CSNK1G3
Genomic location(hg19): chr5:122881110-122893258:+
Genomic location(hg38): chr5:123545416-123557564:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma
Disease DO ID:
4450
Disease MeSH ID:
D002292
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

RCC tissues; normal tissues

Cell lines:

ACHN; Caki-1; A498; 786-O; 293FT; 4120; HK-2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CYLD, LATS2, NDRG2, TIMP3
Associated microRNA: miR-181b
Biological function: promotes tumour growth, proliferation, migration, invasion and metastasis; promotes EMT
Molecular mechanism: circCSNK1G3 directly interacts with miR-181b and positively regulates miR-181b, leading to suppression of tumour suppressor genes (notably TIMP3) and thereby enhancing EMT
Biological pathway or process:

EMT (promotes); metastasis (promotes); proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; FISH / smFISH; RNA Pull-Down; Luciferase Reporter Assay; Transfection; MTT; Colony Formation Assay; BrdU; Wound Healing Assay; Transwell Assay; Western Blot; In Vivo Animal Model; Bioinformatics Analysis; Survival Analysis

Clinical significance:

circCSNK1G3 is suggested as a potential diagnostic and prognostic biomarker in RCC

Description:

circCSNK1G3 (hsa_circ_0001522), derived from CSNK1G3, is up-regulated in RCC and predominantly localized in the cytoplasm. It promotes RCC cell proliferation, migration/invasion and in vivo tumor growth by directly interacting with and up-regulating miR-181b, which suppresses tumor suppressors (notably TIMP3) and enhances EMT, leading to metastasis-related phenotypes.

Confidence score:

0.8207

Other information
Title:

CircCSNK1G3 up-regulates miR-181b to promote growth and metastasis via TIMP3-mediated epithelial to mesenchymal transitions in renal cell carcinoma.

Journal: Journal of cellular and molecular medicine
Published: 2022
PubMed ID: 33560588
Study type:

combined biological and clinical study

Data availability: GSE108735; TCGA-KICH; available from the corresponding author upon request
Code availability: -