circRNA basic information
circBase ID: hsa_circ_0000130
Name: hsa_circ_SNX27
Synonym: circSNX27 / circ_100338 / circSXN27
Host Gene: SNX27
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric adenocarcinoma tissue; normal tissue

Cell lines:

HGC27; AGS; MKN45; MGC803; SGC7901; GES-1; HEK293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: miR-638
Biological function: Facilitates gastric cancer progression; promotes viability, proliferation, migration and invasion; inhibits apoptosis.
Molecular mechanism: Acts as a miRNA sponge by directly binding miR-638 and negatively regulating miR-638 expression.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Actinomycin D / DRB Stability Assay; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Wound Healing Assay; Transwell Assay; Luciferase Reporter Assay; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

circSNX27 was suggested as a promising biomarker of GC diagnosis.

Description:

circSNX27 is up-regulated in gastric cancer tissues and cell lines. Functionally, circSNX27 promotes GC cell viability/proliferation and migration/invasion while suppressing apoptosis, at least partly by sponging miR-638 and downregulating its expression.

Confidence score:

0.7177

Other information
Title:

Circular RNA SNX27 Facilitates Gastric Cancer Progression By Sponging miR-638.

Journal: The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology
Published: 2024
PubMed ID: 39128090
Study type:

combined biological and clinical study

Data availability: Data will be made available on request.
Code availability: -