circRNA basic information
circBase ID: hsa_circ_0008577
Name: hsa_circ_PTPDC1
Synonym: circ-PTPDC1
Host Gene: PTPDC1
Genomic location(hg19): chr9:96827015-96857736:+
Genomic location(hg38): chr9:94064733-94095454:+
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissue; adjacent noncancerous tissue; plasma

Cell lines:

AGS; MKN28; SGC-7901; MKN-45; MGC-803; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: ELK1, AGO2
Associated microRNA: miR-139-3p
Biological function: promotes proliferation, migration, and invasion of gastric cancer cells; associated with tumor growth and metastasis in vivo
Molecular mechanism: ceRNA mechanism: circ-PTPDC1 sponges miR-139-3p to regulate ELK1 expression
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; RNA Pull-Down; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Wound Healing Assay; Western Blot; In Vivo Animal Model; H&E Staining; Clinical Sample Validation; Cohort Study; Survival Analysis; ROC Analysis

Clinical significance:

Overexpression of circ-PTPDC1 was positively correlated with age, invasion depth, advanced clinical stages, and worse survival in patients with GC; potential biomarker for early detection and prognostic prediction of GC

Description:

circ-PTPDC1 (hsa_circ_0008577) is up-regulated in gastric cancer tissues and plasma and mainly localized in the cytoplasm. It promotes gastric cancer cell proliferation, migration, and invasion by acting as a ceRNA that sponges miR-139-3p, thereby increasing ELK1 expression, and it is associated with worse DFS/OS and potential diagnostic/prognostic value.

Confidence score:

0.8921

Other information
Title:

Circ-PTPDC1 promotes the Progression of Gastric Cancer through Sponging Mir-139-3p by Regulating ELK1 and Functions as a Prognostic Biomarker.

Journal: International journal of biological sciences
Published: 2021
PubMed ID: 34803498
Study type:

combined biological and clinical study

Data availability: -
Code availability: -