circRNA basic information
circBase ID: hsa_circ_0002360
Name: hsa_circ_RUNX1
Synonym: circ_0002360
Host Gene: RUNX1
Genomic location(hg19): chr21:36206706-36231875:-
Genomic location(hg38): chr21:34834409-34859578:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005061
MONDO name: lung adenocarcinoma
Disease details: lung adenocarcinoma / LUAD
Disease DO ID:
3910
Disease MeSH ID:
C538231
Disease NCIt ID:
C3512
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

cerebrospinal fluid / CSF; plasma; tumor tissue

Cell lines:

A549; HCC827

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UN
Associated gene: PHF19, Wnt-2, Wnt-3, Wnt-5a, FZD, DVL1, PORCN, TCF
Associated microRNA: hsa-mir-3620-5p
Biological function: promotes cell proliferation; promotes migration; promotes invasion
Molecular mechanism: Predicted ceRNA mechanism via circRNA-miRNA-mRNA network; linked to WNT signaling-related target genes.
Biological pathway or process:

Wnt/beta-catenin (other); proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Transfection; MTT; Transwell Assay; Colony Formation Assay; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis; Sanger Sequencing

Clinical significance:

Included in 60 CSF-circRNAs that were identified and associated with shorten overall survival; circ_0002360 was only identified in CSF from lung cancer patients in the validation cohort.

Description:

hsa_circ_0002360 (RUNX1-derived) is a CSF circRNA candidate associated with WNT signaling. It was detected only in CSF from BM lung adenocarcinoma patients in a validation cohort and is suggested to promote proliferation, migration, and invasion, potentially via a ceRNA network involving WNT pathway genes.

Confidence score:

0.7718

Other information
Title:

Clinical utility of cerebrospinal fluid-derived circular RNAs in lung adenocarcinoma patients with brain metastases.

Journal: Journal of translational medicine
Published: 2022
PubMed ID: 35123506
Study type:

combined biological and clinical study

Data availability: The data used and/or analyzed during the current study are available from the corresponding author on reasonable request.; 10.1186/s12967-022-03274-1
Code availability: -