circRNA basic information
circBase ID: hsa_circ_0007031
Name: hsa_circ_TUBGCP3
Synonym: -
Host Gene: -
Genomic location(hg19): chr13:113158345-113181798:-
Genomic location(hg38): chr13:112504031-112527484:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: osteosarcoma / OS
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

OS tissues; corresponding surrounding normal tissues; adjacent normal tissue

Cell lines:

293 T; HOS; MG-63; 143B; SJSA-1; U2OS; MNNG; hFOB1.19

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: Homeobox B6 (HOXB6), HOXB6, CCL3, CXCL11, CXCL1
Associated microRNA: miR-196a-5p
Biological function: Promotes OS cell proliferation, migration, invasion, tumor growth, metastasis, EMT, and cancer stem cell stemness/self-renewal.
Molecular mechanism: ceRNA mechanism: cytoplasmic hsa_circ_0007031 sponges miR-196a-5p, thereby relieving miR-196a-5p-mediated suppression of HOXB6; HOXB6 modulates chemokines in the cytokine-cytokine receptor interaction signaling pathway.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); EMT (promotes); stemness (promotes); ceRNA regulation (other); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Wound Healing Assay; Western Blot; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); Bioinformatics Analysis

Clinical significance:

May be a promising therapeutic target and possible diagnostic biomarker for OS.

Description:

In this study, hsa_circ_0007031 is up-regulated in osteosarcoma tissues and cell lines and functions as an oncogenic circRNA. It promotes proliferation, migration, invasion, EMT, tumor growth, metastasis, and stem-like properties by sponging miR-196a-5p to increase HOXB6 expression. The hsa_circ_0007031/miR-196a-5p/HOXB6 axis further modulates chemokines in the cytokine-cytokine receptor interaction pathway and is proposed as a potential therapeutic or diagnostic target in OS.

Confidence score:

0.8256

Other information
Title:

Hsa_circ_0007031 promotes the proliferation and migration of osteosarcoma cells by sponging miR-196a-5p to regulate the HOXB6.

Journal: Biochemical pharmacology
Published: 2023
PubMed ID: 37356630
Study type:

combined biological and clinical study

Data availability: GSE96964; Data available on request from the authors.
Code availability: -