circRNA basic information
circBase ID: hsa_circ_0001387
Name: hsa_circ_WHSC1
Synonym: circ_0001387
Host Gene: WHSC1
Genomic location(hg19): chr4:1902352-1936989:+
Genomic location(hg38): chr4:1900625-1935262:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer / BC
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

BC tissues; adjacent tissue samples; xenograft tumor tissues

Cell lines:

MCF-10A; MCF-7; MDA-MB-231; MDA-MB-468

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SKA2, Ago2
Associated microRNA: miR-136-5p
Biological function: Promotes breast cancer cell proliferation, migration and invasion, inhibits apoptosis, and promotes tumor growth in vivo.
Molecular mechanism: Acts as a miRNA sponge (ceRNA) for miR-136-5p to increase SKA2 expression.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Clinical Sample Validation; Transfection; Colony Formation Assay; EdU Staining; Annexin V/PI Flow Cytometry; Transwell Assay; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circ_0001387 expression is associated with poorer prognosis in BC patients.

Description:

circ_0001387 is up-regulated in breast cancer tissues and cell lines and promotes malignant phenotypes (proliferation, migration/invasion) while inhibiting apoptosis. Mechanistically, it sponges miR-136-5p, thereby relieving repression of SKA2 and promoting tumor growth in a cell line-derived xenograft model; high circ_0001387 correlates with poorer prognosis.

Confidence score:

0.8592

Other information
Title:

Circ_0001387 regulates SKA2 to accelerate breast cancer progression through miR-136-5p.

Journal: Thoracic cancer
Published: 2023
PubMed ID: 37132052
Study type:

combined biological and clinical study

Data availability: -
Code availability: -