circRNA basic information
circBase ID: hsa_circ_0012634
Name: hsa_circ_TMEM59
Synonym: circTMEM59
Host Gene: TMEM59
Genomic location(hg19): chr1:54506428-54509198:-
Genomic location(hg38): chr1:54040755-54043525:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent normal tissues

Cell lines:

HT29; LoVo; HCT116; SW480; DLD1; NCM460; HEK-293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: ID4, AGO2
Associated microRNA: miR-668-3p
Biological function: inhibits cell growth/proliferation; promotes apoptosis; inhibits migration and invasion/metastasis; represses cell cycle transition
Molecular mechanism: ceRNA mechanism: circTMEM59 sponges miR-668-3p to increase ID4 expression
Biological pathway or process:

ceRNA regulation (other); proliferation (inhibits); apoptosis (promotes); cell cycle (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNase R Treatment; divergent primers PCR; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; CCK8; EdU Staining; Colony Formation Assay; Cell Cycle Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); TUNEL; H&E Staining; Clinical Sample Validation; Survival Analysis

Clinical significance:

decreased circTMEM59 was closely related to adverse clinicopathological characteristics and the shorter survival time of CRC patients; circTMEM59 can serve as clinical biomarkers for CRC

Description:

circTMEM59 (hsa_circ_0012634) is down-regulated in colorectal cancer tissues and CRC cell lines and its low level correlates with worse OS/DFS. Functionally, circTMEM59 suppresses proliferation, cell-cycle progression, migration/invasion and promotes apoptosis in vitro and in nude-mouse xenograft/metastasis models. Mechanistically, it acts as a ceRNA that sponges miR-668-3p to increase ID4 expression (circTMEM59/miR-668-3p/ID4 axis).

Confidence score:

0.8684

Other information
Title:

Upregulated circTMEM59 Inhibits Cell Growth and Metastasis by miR-668-3p/ID4 Axis in Colorectal Cancer.

Journal: Oxidative medicine and cellular longevity
Published: 2022
PubMed ID: 35656024
Study type:

combined biological and clinical study

Data availability: GSE142837; The datasets used in the study are available from the corresponding author on reasonable request.
Code availability: -