circRNA basic information
circBase ID: hsa_circ_0071681
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr5:896779-901546:+
Genomic location(hg38): chr5:896664-901431:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissue; normal-appearing tissues (NATs)

Cell lines:

SW480

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UN
Associated gene: KLF4, MYC, CCNA2, RACGAP1, CD44
Associated microRNA: hsa-miR-29a-3p
Biological function: Potentially participates in CRC development by acting in a ceRNA axis with hsa-miR-29a-3p and KLF4, affecting proliferation and possibly invasion/metastasis and genomic stability (as hypothesized).
Molecular mechanism: Proposed ceRNA/miRNA sponge mechanism involving hsa-miR-29a-3p with downstream KLF4 regulation.
Biological pathway or process:

ceRNA regulation (other); proliferation (other); invasion (other); metastasis (other); Wnt/beta-catenin (other); Hippo/YAP (other); EMT (other)

Detected method:
M
Validation methods:

Microarray; Bioinformatics Analysis; Survival Analysis; ROC Analysis

Clinical significance:

Identified in a ceRNA sub-network with potential regulatory effect on survival-related genes; proposed as potential diagnostic/prognostic biomarker pending experimental validation.

Description:

This study identifies hsa_circ_0071681 in an in-silico ceRNA sub-network, proposing it sponges hsa-miR-29a-3p to affect KLF4 and related survival-associated hub genes in CRC. The mechanistic and clinical implications are computationally inferred and require experimental validation.

Confidence score:

0.459

Other information
Title:

Integrated whole transcriptome profiling revealed a convoluted circular RNA-based competing endogenous RNAs regulatory network in colorectal cancer.

Journal: Scientific reports
Published: 2024
PubMed ID: 38167453
Study type:

bioinformatics study

Data availability: GSE126094; GSE115513; GSE39582; GSE8671; GSE9348; GSE21510; GSE44076; TCGA
Code availability: -