circRNA basic information
circBase ID: hsa_circ_0084100
Name: hsa_circ_IKBKB
Synonym: circIKBKB
Host Gene: IKBKB
Genomic location(hg19): chr8:42146151-42151030:+
Genomic location(hg38): chr8:42288633-42293512:+
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer bone metastasis
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

normal breast tissues; primary BC tissues; bone-metastatic BC tissues (at bone)

Cell lines:

SCP2; MCF7; SKBR3; MDA-MB-231; 4175

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: IKKalpha, IKKbeta, IKKgamma, p65, p50, IkappaBalpha, EIF4A3, M-CSF, GM-CSF
Associated microRNA: -
Biological function: Promotes breast cancer bone metastasis by inducing bone pre-metastatic niche formation and promoting osteoclastogenesis.
Molecular mechanism: Directly binds active IKKbeta and p65 to sustain NF-kappaB activation by promoting IKKbeta-mediated IkappaBalpha phosphorylation and inhibiting the IkappaBalpha negative feedback; recruits NF-kappaB to M-CSF and GM-CSF promoters to increase their expression; circIKBKB cyclization is promoted by EIF4A3 binding to flanking regions.
Biological pathway or process:

NF-kappaB (promotes); osteoclastogenesis (promotes); metastasis (promotes); proliferation (promotes)

Detected method:
Q
H
S
Validation methods:

circRNA-seq; ISH (In Situ Hybridization); Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Clinical Sample Validation; Survival Analysis; Transfection; In Vivo Animal Model; IF (Immunofluorescence); FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); ChIP / ChIP-seq; ELISA; Western Blot; TUNEL; H&E Staining

Clinical significance:

High circIKBKB expression correlates with breast cancer bone metastasis and shorter bone-metastasis-free survival.

Description:

circIKBKB (hsa_circ_0084100, from IKBKB) is up-regulated in bone-metastatic breast cancer and promotes osteolytic bone metastasis. It sustains NF-kappaB signaling by directly interacting with active IKKbeta and p65, disrupting the IkappaBalpha negative feedback loop, and enhances bone remodeling factor (M-CSF/GM-CSF) transcription to drive osteoclastogenesis and pre-metastatic niche formation. High circIKBKB is associated with shorter bone-metastasis-free survival.

Confidence score:

0.8793

Other information
Title:

Circular RNA circIKBKB promotes breast cancer bone metastasis through sustaining NF-kappaB/bone remodeling factors signaling.

Journal: Molecular cancer
Published: 2021
PubMed ID: 34325714
Study type:

combined biological and clinical study

Data availability: Supplementary material available at 10.1186/s12943-021-01394-8
Code availability: -