circRNA basic information
circBase ID: hsa_circ_0029340
Name: hsa_circ_SCARB1
Synonym: hsa_circRNA_101202
Host Gene: SCARB1
Genomic location(hg19): chr12:125292306-125294835:-
Genomic location(hg38): chr12:124807760-124810289:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0005005
MONDO name: clear cell renal carcinoma
Disease details: clear cell renal cell carcinoma
Disease DO ID:
 4467
Disease MeSH ID:
 -
Disease NCIt ID:
 C4033
Disease ICD11 ID:
 -
Disease OMIM ID:
 -
Species: Human
Species details: Homo sapiens
Tissue specimen:

clear cell renal cell carcinoma tissues; matched non-tumor tissues
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
UP
Associated gene: GRM4
Associated microRNA: miR-1205, miR-657
Biological function: unknown
Molecular mechanism: ceRNA (miRNA sponge) regulatory network prediction
Biological pathway or process:

ceRNA regulation (other)
Detected method:
M
Validation methods:

Microarray; Bioinformatics Analysis
Clinical significance:

-
Description:

hsa_circ_0029340 is up-regulated in ccRCC (microarray) and was used to construct a predicted ceRNA network. It was predicted to sponge miR-1205 and miR-657, forming an axis such as hsa_circ_0029340/miR-657/GRM4.
Confidence score:

0.1768
Other information
Title:

Construct a circRNA/miRNA/mRNA regulatory network to explore potential pathogenesis and therapy options of clear cell renal cell carcinoma.

Journal: Scientific reports
Published: 2020
PubMed ID: 32788609
Study type:

bioinformatics study
Data availability: GSE100186; TCGA
Code availability: -