circRNA basic information
circBase ID: hsa_circ_0006608
Name: hsa_circ_PFKP
Synonym: circPFKP / circular phosphofructokinase, platelet
Host Gene: PFKP
Genomic location(hg19): chr10:3160973-3162236:+
Genomic location(hg38): chr10:3118781-3120044:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; paired non-cancerous tissues

Cell lines:

HGC-27; NCI-N87; AGS; SGC-7901; MKN45; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: ADAMTSL5
Associated microRNA: miR-644
Biological function: Suppresses gastric cancer cell proliferation, invasion and migration; inhibits tumor growth in vivo
Molecular mechanism: Acts as a ceRNA sponge for miR-644 to upregulate ADAMTSL5
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; MTT; Colony Formation Assay; Transwell Assay; RNA Pull-Down; Luciferase Reporter Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Clinical Sample Validation

Clinical significance:

-

Description:

circPFKP is down-regulated in gastric cancer and functions as a tumor suppressor by inhibiting proliferation, migration/invasion and xenograft growth. Mechanistically, it acts as a ceRNA sponge for miR-644, thereby increasing ADAMTSL5 expression (circPFKP/miR-644/ADAMTSL5 axis).

Confidence score:

0.8508

Other information
Title:

Circular RNA circPFKP suppresses the proliferation and metastasis of gastric cancer cell via sponging miR-644 and regulating ADAMTSL5 expression.

Journal: Bioengineered
Published: 2022
PubMed ID: 35587154
Study type:

combined biological and clinical study

Data availability: GSE93451; GSE89143; GSE78092
Code availability: -