circRNA basic information
circBase ID: hsa_circ_0079587
Name: hsa_circ_IGF2BP3
Synonym: -
Host Gene: IGF2BP3
Genomic location(hg19): chr7:23353140-23401360:-
Genomic location(hg38): chr7:23313521-23361741:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small-cell lung carcinoma
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

NSCLC tissues; paired adjacent nontumorous tissues

Cell lines:

HEK293T; A549; NCI-H1650; NCI-H1975; SW900; SK-MES-1; NCI-H1703; NCI-H520; BEAS-2B; 16HBE; LLC

In vivo animal model:

syngeneic model

circRNA-disease information
Expression pattern:
UP
Associated gene: PKP3, METTL3, YTHDC1, PD-L1, OTUB1, FXR1
Associated microRNA: miR-328-3p, miR-3173-5p
Biological function: promotes tumor immune evasion by inhibiting CD8+ T cell responses and compromising antitumor immunity
Molecular mechanism: m6A modification (METTL3/YTHDC1-dependent) promotes circIGF2BP3 circularization; circIGF2BP3 sponges miR-328-3p and miR-3173-5p to upregulate PKP3; PKP3 stabilizes OTUB1 mRNA via FXR1, increasing PD-L1 deubiquitination and immune escape
Biological pathway or process:

immune regulation (inhibits); ceRNA regulation (promotes); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; RNase R Treatment; Sanger Sequencing; divergent primers PCR; Actinomycin D / DRB Stability Assay; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Transfection; Flow Cytometry(Non-apoptosis/cycle); Annexin V/PI Flow Cytometry; IF (Immunofluorescence); ELISA; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); Survival Analysis

Clinical significance:

high circIGF2BP3 expression correlated with shorter overall survival and was an independent prognostic marker in NSCLC

Description:

circIGF2BP3 is upregulated in NSCLC and suppresses CD8+ T cell-mediated antitumor immunity. It acts as an m6A-regulated cytoplasmic ceRNA that sponges miR-328-3p/miR-3173-5p to increase PKP3, ultimately promoting OTUB1-dependent PD-L1 deubiquitination and tumor immune evasion, and high expression predicts poor overall survival.

Confidence score:

0.8816

Other information
Title:

N6-methyladenosine-modified circIGF2BP3 inhibits CD8+ T-cell responses to facilitate tumor immune evasion by promoting the deubiquitination of PD-L1 in non-small cell lung cancer.

Journal: Molecular cancer
Published: 2021
PubMed ID: 34416901
Study type:

combined biological and clinical study

Data availability: GSE126533
Code availability: -