circRNA basic information
circBase ID: hsa_circ_0006091
Name: hsa_circ_RGS12
Synonym: -
Host Gene: RGS12
Genomic location(hg19): chr4:3317796-3344780:+
Genomic location(hg38): chr4:3316069-3343053:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; matched healthy tissues; adjacent tissues; serum

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: RGS12, QKI, CTNNA1, GSK-3b
Associated microRNA: hsa-miR-1197, hsa-miR-1248, hsa-miR-1231, hsa-miR-1286
Biological function: Potential biomarker for HCC diagnosis and monitoring recurrence; contributes to occurrence and development of liver carcinoma (as inferred by pathway/functional analyses).
Molecular mechanism: ceRNA network with predicted miRNAs and downstream target genes; circRNA-miRNA-mRNA regulatory network construction.
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; divergent primers PCR; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Diagnostic biomarker for HCC; plasma/serum levels decrease after surgery and increase with recurrence; ROC AUC reported and combined diagnosis with AFP or RGS12 improves sensitivity and specificity.

Description:

hsa_circ_0006091 is up-regulated in HCC tissues and is detectable in serum, showing postoperative decline and recurrence-associated rebound. The study constructs a predicted circRNA-miRNA-mRNA network (4 miRNAs) and supports its use as a diagnostic/monitoring biomarker, with improved ROC performance when combined with AFP or RGS12.

Confidence score:

0.6957

Other information
Title:

Circular RNA hsa_circ_0006091 as a novel biomarker for hepatocellular carcinoma.

Journal: Bioengineered
Published: 2022
PubMed ID: 35068348
Study type:

combined biological and clinical study

Data availability: GSE159220
Code availability: -