circRNA basic information
circBase ID: hsa_circ_0089033
Name: hsa_circ_PPP2R4
Synonym: circPPP2R4
Host Gene: PPP2R4
Genomic location(hg19): chr9:131891263-131893918:+
Genomic location(hg38): chr9:129128984-129131639:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; normal tissues; tumor tissues; adjacent normal tissues; lung tissues

Cell lines:

SW480; HCT116; RKO; SW620; HT-29; LoVo; DLD-1; NCM460; HEK-293T; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: FOXK1, AGO2
Associated microRNA: miR-646
Biological function: Promotes CRC cell proliferation, migration, invasion, tumor growth and lung metastasis; reduces reactive oxygen species generation.
Molecular mechanism: circPPP2R4 acts as a ceRNA and miRNA sponge for miR-646, upregulates FOXK1 expression, and reduces ROS production to promote CRC progression.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes); other pathway/process (inhibits)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RT-qPCR; Microarray; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Flow Cytometry(Non-apoptosis/cycle); Transwell Assay; Wound Healing Assay; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); Western Blot; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Potential diagnostic biomarker; high circPPP2R4 levels were positively correlated with advanced clinical stage, T stage and lymph node metastasis.

Description:

circPPP2R4 is upregulated in colorectal cancer tissues and cells and is associated with advanced clinical stage, T stage and lymph node metastasis. It promotes CRC proliferation, migration, invasion, tumor growth and lung metastasis by acting as a miR-646 sponge to upregulate FOXK1 and reduce ROS production. The study suggests circPPP2R4 has potential diagnostic and therapeutic value in CRC.

Confidence score:

0.8933

Other information
Title:

circPPP2R4 promotes colorectal cancer progression and reduces ROS production through the miR-646/FOXK1 axis.

Journal: Molecular carcinogenesis
Published: 2024
PubMed ID: 37750597
Study type:

combined biological and clinical study

Data availability: GSE126094; GSE142837; TCGA; CPTAC; UALCAN; available from the corresponding author upon reasonable request
Code availability: -