circRNA basic information
circBase ID: hsa_circ_0029803
Name: -
Synonym: Circular RNA 0029803
Host Gene: -
Genomic location(hg19): chr13:26911703-26928017:+
Genomic location(hg38): chr13:26337566-26353880:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

Tumor tissues; paracancerous tissues

Cell lines:

HCT-116; SW480; NCM460

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SKIL
Associated microRNA: miR-216b-5p
Biological function: Promotes proliferation, migration, invasion, EMT and glycolysis; inhibits apoptosis; promotes tumor growth in vivo.
Molecular mechanism: Acts as a miR-216b-5p sponge (ceRNA) to regulate SKIL expression.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); EMT (promotes); glycolysis (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; Transfection; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; Luciferase Reporter Assay; In Vivo Animal Model; IHC (Immunohistochemistry); Clinical Sample Validation; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circ_0029803 expression was associated with lower 5-year overall survival; circ_0029803 might be a promising molecular marker for the diagnosis of CRC.

Description:

circ_0029803 is up-regulated in colorectal cancer and acts as an oncogenic circRNA. It mainly localizes to the cytoplasm and promotes CRC malignant phenotypes (proliferation, migration/invasion, EMT, glycolysis, and tumor growth) by sponging miR-216b-5p to increase SKIL expression, and high expression predicts worse overall survival.

Confidence score:

0.8153

Other information
Title:

Circ_0029803 serves as the sponge of miR-216b-5p to promote the progression of colorectal cancer by regulating SKIL expression.

Journal: World journal of surgical oncology
Published: 2021
PubMed ID: 34479589
Study type:

combined biological and clinical study

Data availability: -
Code availability: -