circRNA basic information
circBase ID: hsa_circ_0079929
Name: hsa_circ_CDK13
Synonym: hsa_circ_0079299
Host Gene: CDK13
Genomic location(hg19): chr7:40027197-40027857:+
Genomic location(hg38): chr7:39987598-39988258:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tumor tissues; adjacent liver tissues / para-cancerous tissues

Cell lines:

SK-Hep-1; SMMC-7721; 7702; LM-3; PRL-RF5; PLC-RF5

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: PI3K/AKT/mTOR signaling pathway, CCNB1
Associated microRNA: -
Biological function: Suppresses tumor cell proliferation and tumor growth; induces cell cycle arrest/retards cell cycle progression.
Molecular mechanism: Partly inhibits proliferation by inhibiting PI3K/AKT/mTOR signaling and reducing nuclear CCNB1.
Biological pathway or process:

proliferation (inhibits); cell cycle (inhibits); PI3K/AKT/mTOR (inhibits)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; EdU Staining; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Cell Cycle Assay; Annexin V/PI Flow Cytometry; Western Blot; In Vivo Animal Model

Clinical significance:

-

Description:

hsa_circ_0079929 (CDK13-derived) is down-regulated in HCC tissues and HCC cell lines. Its overexpression suppresses HCC tumor cell proliferation and tumorigenesis, and retards cell cycle progression, partly by inhibiting the PI3K/AKT/mTOR pathway and reducing nuclear CCNB1.

Confidence score:

0.6643

Other information
Title:

A circular RNA hsa_circ_0079929 inhibits tumor growth in hepatocellular carcinoma.

Journal: Cancer management and research
Published: 2019
PubMed ID: 30655696
Study type:

combined biological and clinical study

Data availability: -
Code availability: -