circRNA basic information
circBase ID: hsa_circ_0008309
Name: hsa_circ_CUL3
Synonym: -
Host Gene: CUL3
Genomic location(hg19): chr2:225400244-225422573:-
Genomic location(hg38): chr2:224535527-224557856:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004958
MONDO name: oral cavity squamous cell carcinoma
Disease details: oral squamous cell carcinoma
Disease DO ID:
0050866
Disease MeSH ID:
-
Disease NCIt ID:
C4833
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

OSCC tissues; adjacent normal tissues

Cell lines:

SCC15; CAL27; 293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: ATXN1
Associated microRNA: miR-1290, miR-136-5P, miR-382-5P
Biological function: May act as a tumor suppressor in OSCC and modulate miR-136-5P/miR-382-5P to increase ATXN1 expression in OSCC cell lines.
Molecular mechanism: Predicted to act as a miRNA sponge (ceRNA) for miR-136-5P and miR-382-5P, thereby increasing ATXN1 expression.
Biological pathway or process:

ceRNA regulation (other); Notch (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RNase R Treatment; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis; Transfection; Western Blot; ROC Analysis

Clinical significance:

May serve as a potential biomarker for the diagnosis of OSCC; ROC AUC=0.7642; expression associated with pathological differentiation.

Description:

hsa_circ_0008309 is down-regulated in OSCC tissues and is associated with pathological differentiation, showing potential diagnostic value. Mechanistically, it is predicted and functionally supported to repress miR-136-5P/miR-382-5P and increase ATXN1 expression, consistent with a ceRNA-like role in OSCC cell lines.

Confidence score:

0.7039

Other information
Title:

Hsa_circ_0008309 May Be a Potential Biomarker for Oral Squamous Cell Carcinoma.

Journal: Disease markers
Published: 2018
PubMed ID: 30344795
Study type:

combined biological and clinical study

Data availability: available from the corresponding author upon request
Code availability: -