circRNA basic information
circBase ID: hsa_circ_0078136
Name: hsa_circ_SHPRH
Synonym: hsa_ circ_0078136
Host Gene: SHPRH
Genomic location(hg19): chr6:146209155-146256577:-
Genomic location(hg38): chr6:145888019-145935441:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008380
MONDO name: retinoblastoma
Disease details: retinoblastoma
Disease DO ID:
768
Disease MeSH ID:
D012175
Disease NCIt ID:
C7541
Disease ICD11 ID:
1855353671
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

RB tumor tissue; adjoining normal tissue samples; subcutaneous tumor tissues

Cell lines:

ARPE-19; Y79; WERI-Rb-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: EIF4A3, SHPRH pre-mRNA, IL-17A, IL-17F
Associated microRNA: -
Biological function: Functions as a tumor suppressor in RB; overexpression inhibits RB cell proliferation, migration, invasion and tumor growth, and promotes apoptosis.
Molecular mechanism: EIF4A3 suppresses hsa_circ_0078136 expression by binding to sequences in the flanking region of SHPRH pre-mRNA; hsa_circ_0078136 suppresses RB tumorigenesis via inhibition of the IL-17 signaling pathway.
Biological pathway or process:

other pathway/process (inhibits); proliferation (inhibits); migration (inhibits); invasion (inhibits); apoptosis (promotes)

Detected method:
Q
Validation methods:

RNase R Treatment; RT-qPCR; Clinical Sample Validation; RIP (RNA Immunoprecipitation); Transfection; CCK8; Transwell Assay; Western Blot; Nuclear-Cytoplasmic Fractionation; In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

Potential therapeutic tool for mitigating RB progression.

Description:

hsa_circ_0078136 is down-regulated in retinoblastoma tissues and cell lines and acts as a tumor suppressor. Its overexpression inhibits RB cell proliferation, migration, invasion, and xenograft tumor growth while promoting apoptosis, partly through suppression of IL-17 signaling. EIF4A3 negatively regulates hsa_circ_0078136 formation by binding flanking sequences in SHPRH pre-mRNA.

Confidence score:

0.7404

Other information
Title:

EIF4A3-induced hsa_circ_0078136 inhibits the tumorigenesis of retinoblastoma via IL-17 signaling pathway.

Journal: International ophthalmology
Published: 2024
PubMed ID: 39180619
Study type:

combined biological and clinical study

Data availability: The data used to support the findings of this study are included within the article
Code availability: -