circRNA basic information
circBase ID: -
Name: hsa_circ_MED13L
Synonym: circRNA1002
Host Gene: MED13L
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

whole blood; liver tissue; adjacent tissue

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: PLAC8, KLF6, FOS
Associated microRNA: hsa-miR-181b-5p, hsa-miR-181d-5p, hsa-miR-2116-5p, hsa-miR-3119, hsa-miR-4423-3p, hsa-miR-4709-3p, hsa-miR-4752, hsa-miR-503-5p, hsa-miR-892b
Biological function: May participate in the pathogenesis/progression of HCC and serves as a stable serum biomarker; associated genes are enriched in hormone pathway and cell-cell interaction processes.
Molecular mechanism: Predicted ceRNA network (circRNA-miRNA-mRNA); circRNA1002 may sponge multiple miRNAs and regulate downstream mRNAs (predicted), with pathway enrichment including oxytocin signaling pathway and GO hormone secretion/transport and cell-cell adhesion terms.
Biological pathway or process:

ceRNA regulation (other); other pathway/process (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Sanger Sequencing; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

circRNA1002 may be a reliable serum biomarker for HCC / early detection of HCC.

Description:

circRNA1002 is consistently down-regulated in HBV-related HCC in both serum/whole blood and tumor tissue versus controls. The study proposes circRNA1002 as a stable serum biomarker for HCC and predicts a circRNA-miRNA-mRNA network involving multiple miRNAs and downstream mRNAs, with enrichment in hormone-related and cell-cell interaction processes.

Confidence score:

0.5135

Other information
Title:

The potential of CircRNA1002 as a biomarker in hepatitis B virus-related hepatocellular carcinoma.

Journal: PeerJ
Published: 2022
PubMed ID: 35782101
Study type:

combined biological and clinical study

Data availability: The raw data are available in the Supplemental File.
Code availability: -