circRNA basic information
circBase ID: hsa_circ_0001320
Name: hsa_circ_FOXP1
Synonym: circFOXP1
Host Gene: FOXP1
Genomic location(hg19): chr3:71064699-71102924:-
Genomic location(hg38): chr3:71015548-71053773:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0003210
MONDO name: intrahepatic cholangiocarcinoma
Disease details: intrahepatic cholangiocarcinoma
Disease DO ID:
4928
Disease MeSH ID:
-
Disease NCIt ID:
C35417
Disease ICD11 ID:
1253728223; 387909164
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ICC frozen tumor specimens; frozen tumor tissues; paraffin-embedded tissue samples; tumor tissue microarray; subcutaneous tumor tissues

Cell lines:

CCLP1; SG231; HCCC-9810; RBE; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: circFOXP1-231aa, OTUD4, NCOA4
Associated microRNA: -
Biological function: inhibits ICC progression, proliferation, colony formation, invasion, tumor growth and recurrence; enhances ferroptosis
Molecular mechanism: circFOXP1 encodes circFOXP1-231aa; circFOXP1-231aa binds OTUD4; OTUD4 suppresses ubiquitination of NCOA4, stabilizes NCOA4 protein, and promotes ferroptosis
Biological pathway or process:

ferroptosis (promotes); proliferation (inhibits); invasion (inhibits); ubiquitination (inhibits); other pathway/process (inhibits)

Detected method:
Q
H
S
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; circRNA-seq; RT-qPCR; FISH / smFISH; ISH (In Situ Hybridization); IHC (Immunohistochemistry); Clinical Sample Validation; Co-IP; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Transwell Assay; Flow Cytometry(Non-apoptosis/cycle); In Vivo Animal Model; Western Blot; Survival Analysis; Bioinformatics Analysis

Clinical significance:

high circFOXP1 expression is associated with longer OS, lower recurrence rates, better prognosis, and may serve as a prognostic factor for patients with ICC

Description:

circFOXP1 is highly expressed in ICC tumors from patients without postoperative recurrence and high expression predicts better prognosis. It suppresses ICC proliferation, invasion, tumor growth, and recurrence by encoding circFOXP1-231aa, which binds OTUD4, inhibits NCOA4 ubiquitination/degradation, and enhances ferroptosis.

Confidence score:

0.8814

Other information
Title:

A novel protein encoded by circFOXP1 enhances ferroptosis and inhibits tumor recurrence in intrahepatic cholangiocarcinoma.

Journal: Cancer letters
Published: 2024
PubMed ID: 38945202
Study type:

combined biological and clinical study

Data availability: Supplementary data online at https://doi.org/10.1016/j.canlet.2024.217092
Code availability: -