circRNA basic information
circBase ID: hsa_circ_0005397
Name: hsa_circ_RHOT1
Synonym: circ_0005397
Host Gene: RHOT1
Genomic location(hg19): chr17:30500849-30503232:+
Genomic location(hg38): chr17:32173830-32176213:+
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009831
MONDO name: malignant pancreatic neoplasm
Disease details: pancreatic cancer
Disease DO ID:
1793
Disease MeSH ID:
-
Disease NCIt ID:
C9005
Disease ICD11 ID:
542147910
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; para-carcinoma tissues; subcutaneous tumors

Cell lines:

PANC-1; CFPAC-1; MiaPaCa-2; AsPC-1; BxPC-3; HPNE; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: EIF4A3, KAT6A, H3K9ac, PCBP2, RHOT1
Associated microRNA: -
Biological function: Circ_0005397 is upregulated in pancreatic cancer, predicts poor prognosis, promotes tumor growth and cell viability, and inhibits erastin-induced ferroptosis; its knockdown sensitizes pancreatic cancer cells to ferroptosis and reduces tumor growth.
Molecular mechanism: EIF4A3 induces circ_0005397 expression by binding flanking sequences of RHOT1; nuclear circ_0005397 binds KAT6A and promotes KAT6A/H3K9ac-mediated transcriptional activation of PCBP2, thereby inhibiting erastin-induced ferroptosis.
Biological pathway or process:

ferroptosis (inhibits); proliferation (promotes); other pathway/process (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; ChIP / ChIP-seq; Transfection; MTT; Flow Cytometry(Non-apoptosis/cycle); In Vivo Animal Model; IHC (Immunohistochemistry); Western Blot; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

Increased circ_0005397 expression was associated with poor prognosis and may serve as a prognostic biomarker and therapeutic target in pancreatic cancer.

Description:

This study identifies hsa_circ_0005397/circRHOT1 as an upregulated nuclear circRNA in pancreatic cancer associated with poor patient survival. EIF4A3 induces circ_0005397 expression, and circ_0005397 binds KAT6A to enhance H3K9ac-mediated PCBP2 transcription, thereby suppressing erastin-induced ferroptosis and supporting tumor progression. Knockdown of circ_0005397 sensitizes pancreatic cancer cells and xenograft tumors to ferroptosis, suggesting therapeutic and prognostic relevance.

Confidence score:

0.8954

Other information
Title:

Circ_0005397 inhibits ferroptosis of pancreatic cancer cells by up-regulating PCBP2 through KAT6A/H3K9Ac.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology
Published: 2024
PubMed ID: 39235355
Study type:

combined biological and clinical study

Data availability: The datasets generated during and/or analyzed during the current study are available from the corresponding author upon reasonable request.
Code availability: -