circRNA basic information
circBase ID: hsa_circ_0034398
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr15:36936478-36950106:+
Genomic location(hg38): chr15:36644277-36657905:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissue; adjacent normal mucosa; serum

Cell lines:

AGS

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DS
Associated gene: EIF4A3
Associated microRNA: -
Biological function: Component of an 8-circRNA noninvasive serum diagnostic biomarker panel for GC.
Molecular mechanism: Not experimentally characterized; discussed potential interaction with RBP EIF4A3 for most panel circRNAs.
Biological pathway or process:

not specified

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; divergent primers PCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Included in the validated 8-circRNA serum risk-prediction model for GC diagnosis and early-stage detection.

Description:

hsa_circ_0034398 is one of the eight circRNAs measurable in serum and used to build a logistic regression risk model for gastric cancer diagnosis. It was discovered in microarray datasets and validated by RT-qPCR in tissue and serum cohorts.

Confidence score:

0.6556

Other information
Title:

Diagnostic efficacy of circular RNAs as noninvasive, liquid biopsy biomarkers for early detection of gastric cancer.

Journal: Molecular cancer
Published: 2022
PubMed ID: 35139874
Study type:

combined biological and clinical study

Data availability: GSE89143; GSE83521
Code availability: -