circRNA basic information
circBase ID: -
Name: hsa_circ_USP4
Synonym: circRNA_21729
Host Gene: USP4
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005002
MONDO name: chronic obstructive pulmonary disease
Disease details: chronic obstructive pulmonary disease
Disease DO ID:
3083
Disease MeSH ID:
D029424
Disease NCIt ID:
C3199
Disease ICD11 ID:
133207228
Disease OMIM ID:
606963
Species: Human
Species details: Homo sapiens
Tissue specimen:

lung tissue; adjacent cancer lung tissue samples; lung paracancer tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DS
Associated gene: -
Associated microRNA: hsa-miR-330-5p
Biological function: May be related to chronic bronchitis pathology and may be a potential therapeutic target for LC with COPD.
Molecular mechanism: The study tested a predicted hsa-miR-330-5p sponge relationship, but concluded that circRNA_21279 cannot regulate hsa-miR-330-5p involvement in disease progression through the ceRNA mechanism; no confirmed molecular mechanism was specified.
Biological pathway or process:

other pathway/process (other)

Detected method:
Q
M
Validation methods:

RNase R Treatment; Microarray; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

May be a potential therapeutic target for LC with COPD.

Description:

circRNA_21729 was identified through microarray/WGCNA as a candidate circRNA associated with chronic bronchitis pathology in LC patients with COPD, and its expression pattern was validated by RT-qPCR. Although hsa-miR-330-5p was predicted as a sponged miRNA, the authors concluded that circRNA_21279/circRNA_21729 likely does not regulate hsa-miR-330-5p through a ceRNA mechanism in disease progression.

Confidence score:

0.5135

Other information
Title:

Differential expression profiles and functional prediction of circular RNAs in lung cancer patients with chronic obstructive pulmonary disease: a pilot study.

Journal: General physiology and biophysics
Published: 2024
PubMed ID: 38953571
Study type:

combined clinical and bioinformatics study

Data availability: HRA002550; https://ngdc.cncb.ac.cn/gsa-human/
Code availability: -