circRNA basic information
circBase ID: -
Name: hsa_circ_DNA2
Synonym: circDNA2
Host Gene: DNA2
Genomic location(hg19): chr10:70218860-70229920:.
Genomic location(hg38): chr10:68459103-68470163:.
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; adjacent normal gastric tissues

Cell lines:

GES-1; AGS; SGC-7901; BGC-823

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: CCDC6
Associated microRNA: hsa-miR-149-5p
Biological function: promotes GC cell proliferation and growth; promotes lymphatic metastasis/lymph node metastasis
Molecular mechanism: ceRNA mechanism: circDNA2 sponges miR-149-5p to relieve repression of CCDC6, thereby increasing CCDC6 expression
Biological pathway or process:

proliferation (promotes); metastasis (promotes); ceRNA regulation (promotes)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; FISH / smFISH; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Clinical Sample Validation; ROC Analysis

Clinical significance:

High circDNA2 expression is associated with lymphatic invasion/lymph node metastasis; circDNA2 combined with miR-149-5p may help predict GC occurrence (AUC 0.7301); circDNA2 expression was not significantly correlated with OS or survival after chemotherapy

Description:

circDNA2 is up-regulated in gastric cancer and mainly localized in the cytoplasm. It promotes GC cell proliferation and lymphatic metastasis by sponging miR-149-5p, thereby increasing CCDC6 expression.

Confidence score:

0.8588

Other information
Title:

Circular RNA circDNA2 upregulates CCDC6 expression to promote the progression of gastric cancer via miR-149-5p suppression.

Journal: Molecular therapy. Nucleic acids
Published: 2021
PubMed ID: 34552818
Study type:

combined biological and clinical study

Data availability: GSE167512
Code availability: -