circRNA basic information
circBase ID: -
Name: hsa_circ_FLI1
Synonym: FECR1 / FLI1 exonic circular RNA / FLI1 circular RNA / FLI1 circular RNA FECR1
Host Gene: FLI1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

breast cancer tissues

Cell lines:

MDA-MB231; MCF7; SKBR3; T47D; BT474; ZR751; 293 T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UN
Associated gene: FLI1 promoter, TET1, DNMT1
Associated microRNA: -
Biological function: Promotes invasion/metastasis of breast cancer cells and activates FLI1 transcription via epigenetic regulation.
Molecular mechanism: FECR1 binds the FLI1 promoter in cis and recruits TET1 to demethylate CpG islands; FECR1 also binds the DNMT1 promoter and downregulates DNMT1, contributing to FLI1 promoter hypomethylation and increased FLI1 expression.
Biological pathway or process:

invasion (promotes); metastasis (promotes); other pathway/process (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; RT-qPCR; RNA Pull-Down; RIP (RNA Immunoprecipitation); ChIP / ChIP-seq; Transfection; Transwell Assay; Western Blot; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

-

Description:

FECR1 (an exonic circRNA from FLI1) promotes invasion/metastasis in breast cancer cells. Mechanistically, it binds the FLI1 promoter and recruits TET1 to induce CpG demethylation, while also repressing DNMT1, resulting in increased FLI1 expression via an epigenetic positive-feedback loop.

Confidence score:

0.8191

Other information
Title:

A novel FLI1 exonic circular RNA promotes metastasis in breast cancer by coordinately regulating TET1 and DNMT1.

Journal: Genome biology
Published: 2018
PubMed ID: 30537986
Study type:

combined biological and clinical study

Data availability: 10.1186/s13059-018-1594-y; Additional file 1; Additional file 2
Code availability: -