circRNA basic information
circBase ID: hsa_circ_0001230
Name: hsa_circ_DDX17
Synonym: -
Host Gene: DDX17
Genomic location(hg19): chr22:38895404-38897285:-
Genomic location(hg38): chr22:38499399-38501280:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0100313
MONDO name: focal segmental glomerulosclerosis
Disease details: Focal segmental glomerulosclerosis
Disease DO ID:
1312
Disease MeSH ID:
D005923
Disease NCIt ID:
C37308
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma

Cell lines:

immortalized human podocyte

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: PTEN, BCL2L11
Associated microRNA: hsa-miR-106a-5p
Biological function: potential diagnostic biomarker for FSGS; may participate in regulating podocyte apoptosis
Molecular mechanism: ceRNA mechanism; sponges hsa-miR-106a-5p and regulates PTEN and BCL2L11 expression
Biological pathway or process:

apoptosis (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; Microarray; Clinical Sample Validation; RNA Pull-Down; Transfection; Western Blot; ROC Analysis; Bioinformatics Analysis

Clinical significance:

potential diagnosis index for FSGS; AUC of hsa_circ_0001230 was 0.668, and the two-circRNA panel AUC was 0.763

Description:

hsa_circ_0001230 is up-regulated in plasma from patients with FSGS and shows potential diagnostic value. Mechanistically, it may act as a sponge for hsa-miR-106a-5p and regulate PTEN/BCL2L11-mediated podocyte apoptosis.

Confidence score:

0.8111

Other information
Title:

Identification of Plasma hsa_circ_0001230 and hsa_circ_0023879 as Potential Novel Biomarkers for Focal Segmental Glomerulosclerosis and circRNA-miRNA-mRNA Network Analysis.

Journal: Kidney & blood pressure research
Published: 2024
PubMed ID: 38648755
Study type:

combined biological and clinical study

Data availability: GSE104066; GSE108109; GSE108112; GSE133288; online supplementary material
Code availability: -