circRNA basic information
circBase ID: hsa_circ_0004099
Name: hsa_circ_DENND5A
Synonym: circDENND5A
Host Gene: DENND5A
Genomic location(hg19): chr11:9225206-9229179:-
Genomic location(hg38): chr11:9203659-9207632:-
Subcellular localization: extracellular
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0100459
MONDO name: azoospermia
Disease details: non-obstructive azoospermia
Disease DO ID:
14227
Disease MeSH ID:
D053713
Disease NCIt ID:
-
Disease ICD11 ID:
532688254
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

serum; peripheral blood

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: TCF7L2, NRAS, CTNNB1, KRAS
Associated microRNA: -
Biological function: Serum hsa_circ_0004099 is lowly expressed in the failed sperm retrieval group; its over-expression in serum was reported as beneficial for successful sperm retrieval and it showed predictive value for SRR.
Molecular mechanism: Predicted ceRNA mechanism; bioinformatics analysis constructed a circRNA-microRNA-mRNA network and predicted enrichment of target genes in spermatogenesis-related pathways. hsa_circ_0004099 was additionally bioinformatically enriched in pathways involving TCF7L2, NRAS, CTNNB1, and KRAS.
Biological pathway or process:

ceRNA regulation (other); Wnt/beta-catenin (other); Hippo/YAP (other); apoptosis (other); p53 signaling (other); MAPK (other); PI3K/AKT/mTOR (other); proliferation (other); other pathway/process (other)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Serum hsa_circ_0004099 showed significant potential to predict sperm retrieval rate in NOA patients; AUC 0.677 as a single-circRNA panel.

Description:

hsa_circ_0004099 was significantly lower in serum from NOA patients with failed sperm retrieval. Higher serum expression was associated with successful sperm retrieval, and the circRNA contributed to the multi-circRNA SRR prediction panel; bioinformatics linked it to pathways involving TCF7L2, NRAS, CTNNB1, and KRAS.

Confidence score:

0.459

Other information
Title:

A detection model of testis-derived circular RNAs in serum for predicting testicular sperm retrieval rate in non-obstructive azoospermia patients.

Journal: Andrology
Published: 2024
PubMed ID: 38421140
Study type:

combined clinical and bioinformatics study

Data availability: available from the corresponding author upon reasonable request
Code availability: -