circRNA basic information
circBase ID: hsa_circ_0059948
Name: hsa_circ_ITCH
Synonym: CircITCH
Host Gene: ITCH
Genomic location(hg19): chr20:33030012-33033266:+
Genomic location(hg38): chr20:34442207-34445461:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0015459
MONDO name: nasopharyngeal carcinoma
Disease details: nasopharyngeal carcinoma
Disease DO ID:
9261
Disease MeSH ID:
D00007727; D000077274
Disease NCIt ID:
C3871
Disease ICD11 ID:
1883313543
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

NPC/HK1; C666-1; FaDu; NP69; 293 T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: HNRNPC, ITCH, Ki-67
Associated microRNA: miR-224-3p
Biological function: circITCH acts as a tumor suppressor in NPC; circITCH overexpression inhibits NPC cell proliferation, migration and invasion, and promotes apoptosis.
Molecular mechanism: circITCH suppresses NPC progression by sponging miR-224-3p, while the m6A reader/RBP HNRNPC directly interacts with circITCH and reduces circITCH expression.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); apoptosis (promotes); ceRNA regulation (other); m6A modification (other)

Detected method:
Q
Validation methods:

RT-qPCR; Bioinformatics Analysis; Transfection; CCK8; Wound Healing Assay; Transwell Assay; Annexin V/PI Flow Cytometry; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Western Blot

Clinical significance:

circITCH can be used as a biomarker to predict NPC development and increased circITCH expression could be a potential treatment for NPC.

Description:

circITCH is down-regulated in NPC cell lines and functions as a tumor-suppressive circRNA. Its overexpression suppresses proliferation, migration and invasion while promoting apoptosis, mainly by sponging miR-224-3p; HNRNPC directly interacts with circITCH and is proposed to reduce circITCH expression in an m6A-related regulatory context.

Confidence score:

0.627

Other information
Title:

N6-Methyladenosine reader HNRNPC-mediated downregulation of circITCH prevents miR-224-3p sequestering and contributes to tumorigenesis in nasopharyngeal carcinoma.

Journal: Environmental toxicology
Published: 2024
PubMed ID: 38299319
Study type:

combined biological and bioinformatics study

Data availability: GEO; TCGA; GSE36682; Additional files 3-10
Code availability: Additional files 1 and 2