circRNA basic information
circBase ID: hsa_circ_0086414
Name: hsa_circ_BNC2
Synonym: circRNA_0086414
Host Gene: BNC2
Genomic location(hg19): chr9:16435552-16437522:-
Genomic location(hg38): chr9:16435554-16437524:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005005
MONDO name: clear cell renal carcinoma
Disease details: clear cell renal cell carcinoma
Disease DO ID:
4467
Disease MeSH ID:
-
Disease NCIt ID:
C4033
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

human ccRCC tissues; pair-matched normal tissues; clinical ccRCC samples; tumor tissues

Cell lines:

HK2; 786-O; A498; Caki-1; OSRC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: TOB2, PLIN3
Associated microRNA: miR-661
Biological function: Acts as a tumor suppressor in ccRCC; inhibits cell proliferation, migration, invasion, metastasis, EMT-associated marker changes, tumor formation, and lipid accumulation.
Molecular mechanism: hsa_circ_0086414 acts as a miR-661 sponge to upregulate TOB2, and the hsa_circ_0086414/TOB2 axis inhibits PLIN3 to reduce lipid deposition and suppress ccRCC progression.
Biological pathway or process:

ceRNA regulation (other); proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); EMT (inhibits); cell cycle (inhibits); other pathway/process (inhibits)

Detected method:
Q
S
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RT-qPCR; RNA-seq; Clinical Sample Validation; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; Transfection; CCK8; Transwell Assay; Oil Red O Staining; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

hsa_circ_0086414 is downregulated in clinical ccRCC samples and may be a potential therapeutic target via the hsa_circ_0086414/miR-661/TOB2/PLIN3 axis.

Description:

hsa_circ_0086414 is downregulated in ccRCC tissues and cells and functions as a tumor suppressor. It sponges miR-661 to increase TOB2 expression, leading to PLIN3 inhibition and reduced ccRCC proliferation, metastasis, EMT-related changes, and lipid accumulation.

Confidence score:

0.8455

Other information
Title:

Hsa_circ_0086414/transducer of ERBB2 (TOB2) axis-driven lipid elimination and tumor suppression in clear cell renal cell cancer via perilipin 3.

Journal: International journal of biological macromolecules
Published: 2024
PubMed ID: 38272402
Study type:

combined biological and clinical study

Data availability: TCGA-KIRC; GSE40435; GSE53757; datasets available from the corresponding author upon reasonable request; Supplementary data at https://doi.org/10.1016/j.ijbiomac.2024.129636
Code availability: -