circRNA basic information
circBase ID: hsa_circ_0060927
Name: -
Synonym: -
Host Gene: CYP24A1
Genomic location(hg19): chr20:52773707-52788209:-
Genomic location(hg38): chr20:54157168-54171670:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent normal tissues

Cell lines:

HCT-116; HT-29

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: CYP24A1
Associated microRNA: hsa-miR-224-3p, hsa-miR-522-3p, hsa-miR-1264
Biological function: Potential diagnostic biomarker for colorectal cancer; induced by vitamin D treatment; acts as a miRNA sponge to increase CYP24A1 expression
Molecular mechanism: ceRNA mechanism; miRNA sponge activity; transcriptional regulation related to vitamin D response
Biological pathway or process:

ceRNA regulation (promotes); mRNA stability (other)

Detected method:
Q
Validation methods:

RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Could serve as a potential diagnostic marker for CRC, but the diagnostic role could be rejected because these transcripts are not expressed in many samples; hsa_circ_0060927 expression level was correlated with gender.

Description:

This study reports that hsa_circ_0060927 is up-regulated in a subset of CRC tissues and is inducible by vitamin D in CRC cell lines. It may function as a ceRNA/miRNA sponge for hsa-miR-224-3p, hsa-miR-522-3p, and hsa-miR-1264, thereby increasing CYP24A1 expression, and it was explored as a potential diagnostic biomarker with limited clinical utility due to low detectability in many samples.

Confidence score:

0.6238

Other information
Title:

A novel circular RNA hsa_circ_0060927 may serve as a potential diagnostic biomarker for human colorectal cancer.

Journal: Molecular biology reports
Published: 2020
PubMed ID: 32803502
Study type:

combined biological and clinical study

Data availability: The datasets during and/or analysed during the current study available from the corresponding author on reasonable request.
Code availability: -