circRNA basic information
circBase ID: -
Name: mmu_circ_Gigyf2
Synonym: circGigyf2
Host Gene: Gigyf2
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: mouse breast cancer
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Mouse
Species details: Mus musculus
Tissue specimen:

spleen; primary tumours; lung metastases

Cell lines:

4T1; EpH4-Ev; HEK293T

In vivo animal model:

syngeneic model; cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: MHC-I, H-2-Kd, BMDCs, CD4+ T cells, CD8+ T cells, circGigyf2(82-104), circGigyf2(95-103)
Associated microRNA: -
Biological function: Encodes cryptic antigenic peptides that induce antigen-specific T cells and inhibit 4T1 breast cancer tumour growth and lung metastasis when used as peptide or circRNA vaccine; circGigyf2 did not influence proliferation, apoptosis or migration of mouse breast cancer cells.
Molecular mechanism: Noncanonical translation of circGigyf2 generates cryptic antigenic peptides, including circGigyf2(82-104) and the MHC-I epitope circGigyf2(95-103), which elicit antigen-specific cytotoxic T-cell responses against 4T1 breast cancer.
Biological pathway or process:

immune regulation (promotes); proliferation (inhibits); metastasis (inhibits); other pathway/process (promotes)

Detected method:
Q
H
S
Validation methods:

RT-qPCR; RNA-seq; FISH / smFISH; Luciferase Reporter Assay; Transfection; CCK8; Annexin V/PI Flow Cytometry; Transwell Assay; In Vivo Animal Model; Western Blot; Bioinformatics Analysis; Flow Cytometry(Non-apoptosis/cycle)

Clinical significance:

-

Description:

Mouse circGigyf2 is a cytoplasmic tumour-specific circRNA abundantly expressed in 4T1 breast cancer cells. It encodes cryptic antigenic peptides that generate antigen-specific T-cell responses, and circGigyf2 peptide or RNA vaccination reduces 4T1 tumour growth and lung metastases.

Confidence score:

0.6181

Other information
Title:

Tumour circular RNAs elicit anti-tumour immunity by encoding cryptic peptides.

Journal: Nature
Published: 2024
PubMed ID: 38093017
Study type:

biological research

Data availability: GSE210793; GSA-Human: HRA005200; IPX0006186000
Code availability: No custom code was used