circRNA basic information
circBase ID: hsa_circ_0061235
Name: hsa_circ_TPTE
Synonym: circ_0061235
Host Gene: TPTE
Genomic location(hg19): chr21:10914362-10998335:-
Genomic location(hg38): chr21:10514122-10598093:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small-cell lung cancer
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

serum; blood

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: PPM1L
Associated microRNA: miR-3180-5p, miR-196a-3p, miR-203a-3p
Biological function: circ_0061235 is a serum diagnostic biomarker candidate for NSCLC; its decreased levels are associated with lymph node metastasis, distant metastasis, and advanced tumor stages, and its combination with miR-3180-5p and PPM1L improves diagnostic sensitivity and specificity.
Molecular mechanism: Predicted ceRNA mechanism in which circ_0061235 may sequester miR-3180-5p, thereby affecting PPM1L expression; bioinformatics analyses linked the axis to tumor progression pathways including PI3K-Akt signaling, Ras signaling, and regulation of actin cytoskeleton.
Biological pathway or process:

ceRNA regulation (other); PI3K/AKT (other); metastasis (other); other pathway/process (other)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

circ_0061235 is significantly downregulated in NSCLC serum and has diagnostic value for distinguishing healthy individuals or benign lung tumors from NSCLC; reduced circ_0061235 is associated with lymph node metastasis, distant metastasis, and higher tumor stages.

Description:

This study identified serum circ_0061235 as a downregulated circRNA in NSCLC and established a circ_0061235-miR-3180-5p-PPM1L ceRNA network. The axis has diagnostic value for distinguishing NSCLC from healthy controls and benign lung tumors, and low circ_0061235 levels are associated with more aggressive NSCLC features including lymph node metastasis, distant metastasis, and advanced stage.

Confidence score:

0.459

Other information
Title:

A circRNA-based ceRNA network shows its diagnostic value in non-small-cell lung cancer.

Journal: Clinical biochemistry
Published: 2023
PubMed ID: 37793583
Study type:

combined clinical and bioinformatics study

Data availability: Supplementary data; https://doi.org/10.1016/j.clinbiochem.2023.110657
Code availability: -