circRNA basic information
circBase ID: hsa_circ_0000098
Name: hsa_circ_SLC30A7
Synonym: -
Host Gene: SLC30A7
Genomic location(hg19): chr1:101372407-101387397:+
Genomic location(hg38): chr1:100906851-100921841:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent tissues; lung tissues

Cell lines:

HepG2; SNU423; SNU475; HL-7702; Huh-7; SMMC-7721; Huh7

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: ALX4, Ago2
Associated microRNA: miR-1204
Biological function: inhibits proliferation, migration, invasion, EMT, and metastasis of HCC cells
Molecular mechanism: ceRNA mechanism: circ_0000098 sponges miR-1204 to upregulate ALX4
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); EMT (inhibits); metastasis (inhibits); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; Wound Healing Assay; Transwell Assay; Western Blot; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); In Vivo Animal Model; H&E Staining; Clinical Sample Validation

Clinical significance:

its underexpression was associated with larger tumor size of HCC patients

Description:

circ_0000098 (circSLC30A7) is down-regulated in HCC tissues/cells and acts as a tumor-suppressive circRNA. It functions mainly in the cytoplasm as a ceRNA that sponges miR-1204, thereby relieving repression of ALX4 and inhibiting proliferation, migration, invasion, EMT, and lung metastasis.

Confidence score:

0.8206

Other information
Title:

Circular RNA Circ_0000098 Elevates ALX4 Expression via Adsorbing miR-1204 to Inhibit the Progression of Hepatocellular Carcinoma.

Journal: Frontiers in oncology
Published: 2021
PubMed ID: 34900665
Study type:

combined biological and clinical study

Data availability: GSE97332; https://www.frontiersin.org/articles/10.3389/fonc.2021.696078/full#supplementary-material
Code availability: -