circRNA basic information
circBase ID: hsa_circ_0030998
Name: hsa_circ_LAMP1
Synonym: circ_0030998
Host Gene: LAMP1
Genomic location(hg19): chr13:113963957-113964177:+
Genomic location(hg38): chr13:113309642-113309862:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008903
MONDO name: lung cancer
Disease details: lung cancer
Disease DO ID:
1324
Disease MeSH ID:
-
Disease NCIt ID:
C7377
Disease ICD11 ID:
-
Disease OMIM ID:
211980
Species: Human
Species details: Homo sapiens
Tissue specimen:

lung cancer tissue; adjacent tissues

Cell lines:

HBE; A549; H1299; H358; PC9; HEK293; HEK293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: AGO2, MMP1, MMP17
Associated microRNA: miR-558
Biological function: inhibits proliferation; inhibits migration; inhibits invasion; inhibits Taxol resistance; increases Taxol sensitivity
Molecular mechanism: Acts as a miRNA sponge for miR-558 (AGO2-associated), affecting downstream targets MMP1 and MMP17 and thereby suppressing malignant phenotypes and Taxol resistance.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); chemoresistance (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); Transfection; CCK8; Colony Formation Assay; EdU Staining; Transwell Assay; Wound Healing Assay; Western Blot; Clinical Sample Validation; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

Higher circ_0030998 expression resulted in a higher survival rate of lung cancer patients; high expression was negatively related to invasion, distal metastasis and TNM stage.

Description:

hsa_circ_0030998 (circ_0030998), derived from LAMP1 exon 3, is down-regulated in lung cancer tissues/cells and in Taxol-resistant cells. It functions mainly in the cytoplasm as a miR-558 sponge (AGO2-associated), thereby suppressing lung cancer cell proliferation, migration, invasion and reducing Taxol resistance, and its higher expression is associated with better patient survival.

Confidence score:

0.8708

Other information
Title:

A novel circular RNA, hsa_circ_0030998 suppresses lung cancer tumorigenesis and Taxol resistance by sponging miR-558.

Journal: Molecular oncology
Published: 2021
PubMed ID: 33190405
Study type:

combined biological and clinical study

Data availability: -
Code availability: -