circRNA basic information
circBase ID: hsa_circ_0002130
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr19:6702137-6702590:-
Genomic location(hg38): chr19:6702126-6702579:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

non-tumor tissues; tumors; portal vein tumor thrombosis (PVTT)

Cell lines:

MHCC97H; Hep3B

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: GOT2
Associated microRNA: -
Biological function: Inhibits tumor cell growth; promotes GOT2 expression.
Molecular mechanism: Proposed ceRNA/miRNA sponge mechanism regulating GOT2 and gluconeogenesis-related genes.
Biological pathway or process:

gluconeogenesis (promotes); proliferation (inhibits); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; Transfection; RT-qPCR; CCK8; Western Blot

Clinical significance:

Might be associated with prognosis of HCC patients (inferred indirectly via target gene GOT2 survival associations).

Description:

hsa_circ_0002130 is a downregulated ceRNA-network circRNA in HCC and, when overexpressed in HCC cell lines, suppresses cell proliferation while increasing GOT2 RNA and protein expression. The study proposes that hsa_circ_0002130 may act as a miRNA sponge to upregulate GOT2 and affect gluconeogenesis-related programs.

Confidence score:

0.4852

Other information
Title:

Multiple Omics Integration Reveals Key Circular RNAs in Hepatocellular Carcinoma.

Journal: Frontiers in oncology
Published: 2021
PubMed ID: 34094907
Study type:

combined biological and clinical study

Data availability: SRP069212; TCGA-LIHC; https://www.frontiersin.org/articles/10.3389/fonc.2021.621353/full#supplementary-material
Code availability: -