circRNA basic information
circBase ID: hsa_circ_0006282
Name: hsa_circ_TCEB1
Synonym: -
Host Gene: TCEB1
Genomic location(hg19): chr8:74868145-74872053:-
Genomic location(hg38): chr8:73955910-73959818:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

cancerous tissue; adjacent normal tissue; plasma

Cell lines:

NCM460; SW480; SW620; Lovo

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: Acts as a non-invasive diagnostic and dynamic monitoring biomarker for CRC; higher plasma levels are associated with aggressive clinicopathological features (poor differentiation, lymph node metastasis, higher T stage and TNM stage).
Molecular mechanism: Not investigated in CRC in this study.
Biological pathway or process:

not specified

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Plasma hsa_circ_0006282 distinguishes primary CRC patients from healthy donors/colitis patients (AUC reported) and decreases to normal after surgery, increasing after recurrence; high plasma expression is associated with poor differentiation, lymph node metastasis, and advanced T/TNM stage.

Description:

This study identifies hsa_circ_0006282 as an up-regulated circRNA in CRC tissues, CRC plasma, and CRC cell lines. Plasma hsa_circ_0006282 shows diagnostic value by ROC analysis and dynamically decreases after surgery and increases upon recurrence, supporting its use as a non-invasive biomarker for CRC monitoring.

Confidence score:

0.5963

Other information
Title:

Evaluation of plasma circ_0006282 as a novel diagnostic biomarker in colorectal cancer.

Journal: Journal of clinical laboratory analysis
Published: 2022
PubMed ID: 34860442
Study type:

combined biological and clinical study

Data availability: The data that support the findings of this study are available on request from the corresponding author [SM].
Code availability: -