circRNA basic information
circBase ID: -
Name: hsa_circ_AFAP1
Synonym: Circ-AFAP1 / circAFAP1
Host Gene: AFAP1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: unclear
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005005
MONDO name: clear cell renal carcinoma
Disease details: clear cell renal cell carcinoma / ccRCC
Disease DO ID:
4467
Disease MeSH ID:
-
Disease NCIt ID:
C4033
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ccRCC tissue; adjacent normal tissue; pericarcinomatous tissues

Cell lines:

786-O; 786-P; Caki-1; A498; HK-2; HUVEC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: VEGFA, Ago2
Associated microRNA: miR-374b-3p
Biological function: promotes ccRCC cell proliferation and angiogenesis; promotes tumor growth in vivo
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-374b-3p to upregulate VEGFA and activate Ras/ERK signaling
Biological pathway or process:

proliferation (promotes); angiogenesis (promotes); ERK (promotes); ceRNA regulation (promotes)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; ISH (In Situ Hybridization); FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; EdU Staining; Tube Formation Assay; Transwell Assay; Wound Healing Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); Survival Analysis; Clinical Sample Validation; Cohort Study; Bioinformatics Analysis

Clinical significance:

High circAFAP1 level was linked to shorter overall survival and could serve as a prognostic marker in ccRCC

Description:

circAFAP1 is up-regulated in ccRCC and promotes tumor cell proliferation and angiogenesis. It functions as a ceRNA by sponging miR-374b-3p to increase VEGFA expression and activate Ras/ERK signaling, and higher circAFAP1 is associated with worse overall survival.

Confidence score:

0.8847

Other information
Title:

Circ-AFAP1 promote clear cell renal cell carcinoma growth and angiogenesis by the Circ-AFAP1/miR-374b-3p/VEGFA signaling axis.

Journal: Cell death discovery
Published: 2022
PubMed ID: 35173146
Study type:

combined biological and clinical study

Data availability: The analysed data sets generated during the study are available from the corresponding author on reasonable request.
Code availability: -