circRNA basic information
circBase ID: hsa_circ_0060450
Name: hsa_circ_MYBL2
Synonym: circ_0450
Host Gene: MYBL2
Genomic location(hg19): chr20:42302445-42315712:+
Genomic location(hg38): chr20:43673805-43687072:+
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005147
MONDO name: type 1 diabetes mellitus
Disease details: type 1 diabetes mellitus
Disease DO ID:
9744
Disease MeSH ID:
D003922
Disease NCIt ID:
C2986
Disease ICD11 ID:
1651053999
Disease OMIM ID:
222100
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood; PBMCs

Cell lines:

THP1; HEK-293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: SHP2, PTPN11, MYBL2, STAT1, STAT3, IFIT1, IFIH1, CXCL10, iNOS
Associated microRNA: miR-199a-5p, miR-133a-3p, miR-133b
Biological function: negatively regulates IFN-I-induced inflammation; inhibits macrophage-mediated inflammation
Molecular mechanism: ceRNA sponge mechanism: hsa_circ_0060450 sponges miR-199a-5p to upregulate SHP2, suppressing IFN-I-triggered JAK-STAT1/3 signaling
Biological pathway or process:

JAK/STAT (inhibits); inflammation (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Luciferase Reporter Assay; Transfection; Western Blot; ROC Analysis; Bioinformatics Analysis

Clinical significance:

hsa_circ_0060450 in PBMCs could discriminate normal subjects and T1DM patients

Description:

hsa_circ_0060450 is up-regulated in PBMCs from children with T1DM and is distributed in both nucleus and cytoplasm. It acts as a miR-199a-5p sponge to relieve repression of SHP2 (PTPN11), thereby suppressing IFN-I-triggered JAK-STAT1/3 activation and reducing macrophage inflammatory responses; it also shows diagnostic potential via ROC analysis in PBMCs.

Confidence score:

0.8261

Other information
Title:

Hsa_circ_0060450 Negatively Regulates Type I Interferon-Induced Inflammation by Serving as miR-199a-5p Sponge in Type 1 Diabetes Mellitus.

Journal: Frontiers in immunology
Published: 2020
PubMed ID: 33133095
Study type:

combined biological and clinical study

Data availability: GSE133225
Code availability: -