circRNA basic information
circBase ID: -
Name: hsa_circ_EPHB4
Synonym: circEPHB4
Host Gene: EPHB4
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0021042
MONDO name: glioma
Disease details: glioma
Disease DO ID:
-
Disease MeSH ID:
D005910
Disease NCIt ID:
C3059
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

glioma tissue specimens; brain tissues; xenograft tumors

Cell lines:

SVGP12; SHG44; A172; LN229; U373; BT325

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: YBX1, MRPS16, RBBP6
Associated microRNA: -
Biological function: promotes glioma cell proliferation, migration, and invasion; promotes tumor growth in vivo
Molecular mechanism: binds YBX1 to stabilize YBX1 protein by competing with RBBP6 and inhibiting ubiquitin-proteasomal degradation; recruits YBX1 to enhance MRPS16 mRNA stability via m5C modification
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); mRNA stability (promotes); m5C modification (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; RIP (RNA Immunoprecipitation); Transfection; Actinomycin D / DRB Stability Assay; CCK8; EdU Staining; Transwell Assay; Western Blot; Co-IP; IF (Immunofluorescence); In Vivo Animal Model; IHC (Immunohistochemistry); Survival Analysis

Clinical significance:

-

Description:

circEPHB4 is up-regulated in glioma and promotes proliferation, migration and invasion. Mechanistically, it binds YBX1 to prevent RBBP6-mediated ubiquitination and degradation of YBX1, thereby stabilizing YBX1 and enhancing MRPS16 mRNA stability via YBX1-dependent m5C modification, which drives glioma progression in vitro and in xenograft models.

Confidence score:

0.8703

Other information
Title:

CircEPHB4 binds to YBX1 to upregulate MRPS16 and promotes glioma progression.

Journal: Cellular and molecular life sciences : CMLS
Published: 2025
PubMed ID: 41359154
Study type:

combined biological and clinical study

Data availability: All data generated or analysed during this study are included in this published article.
Code availability: -