circRNA basic information
circBase ID: hsa_circ_0005480
Name: hsa_circ_DCLK2
Synonym: -
Host Gene: DCLK2
Genomic location(hg19): chr4:151023629-151023964:+
Genomic location(hg38): chr4:150102477-150102812:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma; tumor tissue specimens

Cell lines:

HGC-27; BGC-823; AGS; MKN-45; SGC-7901; MKN-1; GES-1

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: Potential auxiliary diagnostic and prognostic marker for gastric cancer; high expression is associated with poor differentiation and nerve or vascular invasion, and may assist in identifying proliferative capacity and histological origin of tumors.
Molecular mechanism: Predicted cytoplasmic circRNA-miRNA regulatory mechanism; hsa circ 0005480 may function as a binding platform for miRNAs involved in gastric cancer progression, but direct binding and downstream regulatory mechanisms were not experimentally confirmed.
Biological pathway or process:

proliferation (other); invasion (other); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; Clinical Sample Validation; Nuclear-Cytoplasmic Fractionation; IHC (Immunohistochemistry); ROC Analysis; Bioinformatics Analysis

Clinical significance:

hsa circ 0005480 showed diagnostic performance for distinguishing gastric cancer patients from healthy donors and benign gastric disease patients, improved diagnostic performance when combined with traditional laboratory indicators, and decreased after chemoradiotherapy or surgery, suggesting utility in prognostic assessment and treatment-effect monitoring.

Description:

This study identified hsa circ 0005480 as an up-regulated plasma circRNA in gastric cancer using GEO datasets and RT-qPCR validation in clinical plasma samples. It showed diagnostic value alone and in combination with traditional tumor markers, decreased after treatment or surgery, and was proposed as a marker for screening and prognostic assessment. Mechanistically, it was mainly cytoplasmic and predicted to act as a miRNA-binding platform, although direct functional and mechanistic validation was not performed.

Confidence score:

0.6895

Other information
Title:

Feasibility evaluation of hsa_circ_0005480 as an auxiliary diagnostic and prognostic indicator for gastric cancer.

Journal: Biomarkers in medicine
Published: 2023
PubMed ID: 37902590
Study type:

combined bioinformatics and clinical study

Data availability: GSE83521; GSE93541; GSE131414; www.futuremedicine.com/doi/ suppl/10.2217/bmm-2023-0066
Code availability: -