circRNA basic information
circBase ID: -
Name: hsa_circ_COL1A1
Synonym: circCOL1A1
Host Gene: COL1A1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005076
MONDO name: periodontitis
Disease details: periodontitis
Disease DO ID:
824, 9893
Disease MeSH ID:
D010518
Disease NCIt ID:
C34918
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

gingival tissues; gingiva biopsy samples

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: MMP2, COL6A2, COL8A2, NFATC4, BET1L, RNF24
Associated microRNA: miR-6754-5p, miR-205-5p
Biological function: Predicted to contribute to the etiopathogenesis and development of Redondoviridae-related periodontitis.
Molecular mechanism: Predicted circRNA-miRNA-mRNA ceRNA mechanism involving miR-6754-5p/miR-205-5p and target mRNAs.
Biological pathway or process:

ceRNA regulation (other); other pathway/process (other)

Detected method:
S
Validation methods:

RNA-seq; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

Potential diagnostic marker and therapeutic target for virus-related periodontal lesions.

Description:

circCOL1A1 is up-regulated in periodontitis gingival tissues and was highlighted as a key circRNA in Redondoviridae-related periodontitis. The study predicts that circCOL1A1 may act through a ceRNA network involving miR-6754-5p/miR-205-5p and target mRNAs such as MMP2.

Confidence score:

0.348

Other information
Title:

Redondoviridae infection regulates circRNAome in periodontitis.

Journal: Journal of medical virology
Published: 2022
PubMed ID: 35075668
Study type:

combined clinical and bioinformatics study

Data availability: GSE189022
Code availability: -