circRNA basic information
circBase ID: hsa_circ_0006006
Name: hsa_circ_PDK1
Synonym: CircularRNA_0006006
Host Gene: PDK1
Genomic location(hg19): chr2:173435453-173460751:+
Genomic location(hg38): chr2:172570725-172596023:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small cell lung cancer
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

cancer tissues; adjacent tissues; tumor tissues

Cell lines:

A549; H1299; BEAS-2B; HUVECs

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SRSF7, PDK1, Ago2, Ki-67, Bax, Bcl-2
Associated microRNA: miR-924
Biological function: Circ_0006006 promotes NSCLC cell proliferation, migration, invasion, angiogenesis and tumor growth, and inhibits apoptosis.
Molecular mechanism: Circ_0006006 acts as a ceRNA by sponging miR-924, thereby increasing SRSF7 expression to facilitate NSCLC progression.
Biological pathway or process:

ceRNA regulation (other); proliferation (promotes); migration (promotes); invasion (promotes); angiogenesis (promotes); apoptosis (inhibits); cell cycle (promotes); metastasis (promotes)

Detected method:
Q
Validation methods:

RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Clinical Sample Validation; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Cell Cycle Assay; Wound Healing Assay; Transwell Assay; Tube Formation Assay; Annexin V/PI Flow Cytometry; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); Bioinformatics Analysis

Clinical significance:

Circ_0006006 may be an oncogenic circRNA and a potential molecular mechanism-related marker in NSCLC progression, but no diagnostic or prognostic performance was directly evaluated.

Description:

Circ_0006006 is up-regulated in NSCLC tissues and cell lines. It functions as an oncogenic circRNA by sponging miR-924 to increase SRSF7 expression, thereby promoting proliferation, migration, invasion, angiogenesis and tumor growth while suppressing apoptosis.

Confidence score:

0.8299

Other information
Title:

Circ_0006006 facilitates non-small cell lung cancer progression by modulating miR-924/SRSF7 axis.

Journal: The journal of gene medicine
Published: 2022
PubMed ID: 35037349
Study type:

combined biological and clinical study

Data availability: -
Code availability: -