circRNA basic information
circBase ID: hsa_circ_0001380
Name: hsa_circ_UBXN7
Synonym: circUBXN7
Host Gene: UBXN7
Genomic location(hg19): chr3:196118683-196129890:-
Genomic location(hg38): chr3:196391812-196403019:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004986
MONDO name: urinary bladder carcinoma
Disease details: bladder cancer
Disease DO ID:
4007
Disease MeSH ID:
-
Disease NCIt ID:
C4912
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

BC tissues; adjacent nontumor tissues

Cell lines:

293T; SV-HUC-1; T24; UM-UC-3; J82; EJ; RT4

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: B4GALT3, AGO2
Associated microRNA: miR-1247-3p
Biological function: inhibits proliferation; inhibits migration; inhibits invasion; suppresses tumor growth
Molecular mechanism: circUBXN7 acts as a ceRNA (miRNA sponge) for miR-1247-3p to relieve repression of B4GALT3, increasing B4GALT3 expression.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (inhibits); migration (inhibits); invasion (inhibits)

Detected method:
Q
S
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; MTT; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Western Blot; In Vivo Animal Model; Clinical Sample Validation; Cohort Study; Survival Analysis; Bioinformatics Analysis; RNA-seq

Clinical significance:

Decreased circUBXN7 expression was associated with pathological stage, grade and poor prognosis of BC patients.

Description:

In bladder cancer, circUBXN7 is down-regulated and acts as a tumor suppressor. It sponges miR-1247-3p to increase B4GALT3 expression, thereby inhibiting proliferation, migration/invasion, and tumor growth; low circUBXN7 correlates with worse overall survival.

Confidence score:

0.8836

Other information
Title:

Circular RNA circUBXN7 represses cell growth and invasion by sponging miR-1247-3p to enhance B4GALT3 expression in bladder cancer.

Journal: Aging
Published: 2018
PubMed ID: 30312173
Study type:

combined biological and clinical study

Data availability: -
Code availability: -