circRNA basic information
circBase ID: hsa_circ_0044556
Name: hsa_circ_COL1A1
Synonym: -
Host Gene: COL1A1
Genomic location(hg19): chr17:48271490-48272189:-
Genomic location(hg38): chr17:50194129-50194828:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent normal tissues

Cell lines:

SW480; SW620; HCT116; HT29; NCM460

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: ARL2, MAPK1, PTEN
Associated microRNA: hsa-mir-214-3p, hsa-mir-761, hsa-mir-194-3p, hsa-mir-412-3p, hsa-mir-362-5p
Biological function: promotes CRC progression; promotes proliferation, migration, and invasion
Molecular mechanism: may act as a miRNA sponge to regulate a circRNA-miRNA-mRNA network; knockdown increases hsa-mir-214-3p
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); cell cycle (other); angiogenesis (other); EGFR (other); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Sanger Sequencing; RNase R Treatment; Back-Splice Junction PCR / divergent primers PCR; Transfection; CCK8; Colony Formation Assay; Wound Healing Assay; Transwell Assay; ROC Analysis; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

positively correlated with tumor stage and lymph node metastasis; ROC AUC 0.7274 for distinguishing CRC from adjacent normal tissues; potential biomarker/therapeutic target

Description:

hsa_circ_0044556 is up-regulated in colorectal cancer tissues and is associated with advanced tumor stage and lymph node metastasis. Functionally, its knockdown suppresses CRC cell proliferation, migration, and invasion, suggesting an oncogenic role. Mechanistically, it was proposed to act as a miRNA sponge within a circRNA-miRNA-mRNA network, with hsa-mir-214-3p highlighted as inversely affected upon circRNA silencing.

Confidence score:

0.7932

Other information
Title:

Identification of circular RNA hsa_circ_0044556 and its effect on the progression of colorectal cancer.

Journal: Cancer cell international
Published: 2020
PubMed ID: 32884449
Study type:

combined biological and clinical study

Data availability: GSE126094; 10.1186/s12935-020-01523-1
Code availability: -