circRNA basic information
circBase ID: -
Name: hsa_circ_FNDC3B
Synonym: hsa_circRNA_007148
Host Gene: FNDC3B
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005075
MONDO name: thyroid gland papillary carcinoma
Disease details: papillary thyroid carcinoma
Disease DO ID:
3969
Disease MeSH ID:
-
Disease NCIt ID:
C4035
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

PTC tumor tissues; adjacent normal thyroid tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: mRNAs (41 predicted)
Associated microRNA: hsa-miR-6785-5p, hsa-miR-1275, hsa-miR-490-3p, hsa-miR-1229-5p, hsa-miR-6088
Biological function: Associated with lymph node metastasis; potential diagnostic biomarker and prognostic predictor for PTC.
Molecular mechanism: Predicted circRNA-miRNA-mRNA interaction network (bioinformatics).
Biological pathway or process:

ceRNA regulation (other); VEGF/VEGFR (other); Notch (other); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; divergent primers PCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Higher hsa_circRNA_007148 expression was correlated with lymph node metastasis; ROC AUC 0.846 for distinguishing PTC from normal tissues.

Description:

hsa_circRNA_007148 is up-regulated in PTC tissues and its higher expression is associated with lymph node metastasis. It shows diagnostic potential for distinguishing PTC from adjacent normal thyroid tissues, and was analyzed in a predicted circRNA-miRNA-mRNA network.

Confidence score:

0.6556

Other information
Title:

Profile and clinical implication of circular RNAs in human papillary thyroid carcinoma.

Journal: PeerJ
Published: 2018
PubMed ID: 30123704
Study type:

combined biological and clinical study

Data availability: The raw data are provided in Supplemental Files.
Code availability: -