circRNA basic information
circBase ID: hsa_circ_0001588
Name: hsa_circ_HIST1H4E
Synonym: circ_0001588
Host Gene: HIST1H4E
Genomic location(hg19): chr6:26204839-26205043:+
Genomic location(hg38): chr6:26204611-26204815:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0018177
MONDO name: glioblastoma
Disease details: glioblastoma
Disease DO ID:
3068
Disease MeSH ID:
D005909
Disease NCIt ID:
C3058
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

GBM tissues; adjacent normal tissues

Cell lines:

A172; U251; U87; SHG44; NHAs

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: YY1, Ago2
Associated microRNA: miR-211-5p
Biological function: Promotes GBM cell proliferation, colony formation, migration, invasion and tumor growth in vivo; knockdown suppresses these phenotypes.
Molecular mechanism: circ_0001588 acts as a cytoplasmic ceRNA that sponges miR-211-5p and positively regulates YY1 expression, thereby facilitating GBM progression.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); EMT (promotes)

Detected method:
Q
Validation methods:

Actinomycin D / DRB Stability Assay; RNase R Treatment; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); Western Blot; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circ_0001588 expression is associated with lower survival and may act as a prognostic biomarker or target for GBM diagnosis and treatment.

Description:

circ_0001588 is up-regulated in GBM tissues and glioma cell lines, and high expression is associated with poor patient survival. Functionally, circ_0001588 promotes GBM proliferation, migration, invasion and xenograft tumor growth. Mechanistically, it acts as a cytoplasmic ceRNA that sponges miR-211-5p to increase YY1 expression.

Confidence score:

0.8768

Other information
Title:

Circular RNA circ_0001588 sponges miR-211-5p to facilitate the progression of glioblastoma via up-regulating YY1 expression.

Journal: The journal of gene medicine
Published: 2021
PubMed ID: 34105224
Study type:

combined biological and clinical study

Data availability: GSE146463; datasets available from the corresponding author on reasonable request
Code availability: -