circRNA basic information
circBase ID: hsa_circ_0001483
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr5:54562965-54568003:-
Genomic location(hg38): chr5:55267137-55272175:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissue; distant normal tissue

Cell lines:

293T; AD293; HeLa; AGS; HGC-27; MKN-45

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: PGC
Associated microRNA: hsa-let-7c
Biological function: May act as a ceRNA/miRNA sponge in GC and is associated with pericarcinoma inflammatory cell infiltration and lymphatic metastasis.
Molecular mechanism: ceRNA mechanism via binding (sponging) hsa-let-7c, affecting PGC down-regulation in GC tissue.
Biological pathway or process:

ceRNA regulation (other); immune regulation (other); metastasis (other)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Luciferase Reporter Assay; Bioinformatics Analysis

Clinical significance:

Expression level correlated with pericarcinoma inflammatory cell infiltration and lymphatic metastasis; no significant association with overall survival.

Description:

hsa_circ_0001483 is down-regulated in gastric cancer tissue and binds hsa-let-7c. It is part of a proposed PGC-related ceRNA axis (hsa_circ_0001483-hsa-let-7c-PGC) that may contribute to PGC down-regulation, and its expression is associated with inflammatory cell infiltration and lymphatic metastasis.

Confidence score:

0.4685

Other information
Title:

Identification of PGC-related ncRNAs and their relationship with the clinicopathological features of Gastric Cancer.

Journal: Journal of Cancer
Published: 2021
PubMed ID: 34093839
Study type:

combined biological and clinical study

Data availability: TCGA
Code availability: -