circRNA basic information
circBase ID: hsa_circ_0092493
Name: hsa_circ_ARL3
Synonym: circ-ARL3
Host Gene: ARL3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: Hepatitis B virus-associated hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; HBV positive HCC tissues; HBV negative HCC tissues; tumor tissues

Cell lines:

HepG2.2.15; HepG2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: HBx, METTL3, YTHDC1, ARL3, WNT2, UBE2T, MDM2, TGF-beta2, POLR3G, Ki-67
Associated microRNA: miR-1305
Biological function: circ-ARL3 promotes proliferation, invasion and in vivo growth of HBV-positive HCC cells; knockdown inhibits proliferation and invasion and retards tumor growth.
Molecular mechanism: HBx upregulates METTL3, increasing m6A modification of circ-ARL3; YTHDC1 binds m6A-modified circ-ARL3 and promotes its reverse splicing and biogenesis; cytoplasmic circ-ARL3 sponges miR-1305 to relieve repression of oncogenic targets including WNT2, UBE2T, MDM2, TGF-beta2 and POLR3G.
Biological pathway or process:

proliferation (promotes); invasion (promotes); ceRNA regulation (promotes); m6A modification (other); mRNA stability (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; FISH / smFISH; MeRIP / MeRIP-seq; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; RNA Pull-Down; CCK8; EdU Staining; Colony Formation Assay; Transwell Assay; In Vivo Animal Model; Western Blot; Clinical Sample Validation; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circ-ARL3 was positively correlated with malignant clinical features and poor prognosis; circ-ARL3 expression was positively associated with HBsAg+, larger tumor volume and advanced clinical stage, and high expression predicted shorter survival time.

Description:

circ-ARL3 is an HBV-related, up-regulated circRNA in HBV-positive HCC, and high expression is associated with malignant clinical features and poor survival. Mechanistically, HBx-induced METTL3/YTHDC1-dependent m6A regulation increases circ-ARL3 biogenesis, and cytoplasmic circ-ARL3 promotes HCC proliferation, invasion and xenograft growth by sponging miR-1305 and derepressing oncogenic target genes.

Confidence score:

0.8609

Other information
Title:

N6 -methyladenosine modification of circular RNA circ-ARL3 facilitates Hepatitis B virus-associated hepatocellular carcinoma via sponging miR-1305.

Journal: IUBMB life
Published: 2021
PubMed ID: 33372396
Study type:

combined biological and clinical study

Data availability: Table S1; Supporting Information
Code availability: -