circRNA basic information
circBase ID: hsa_circ_0055478
Name: hsa_circ_PTCD3
Synonym: circPTCD3
Host Gene: PTCD3
Genomic location(hg19): chr2:86335622-86350885:+
Genomic location(hg38): chr2:86108499-86123762:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

breast cancer tumor tissue; adjacent normal tissues; tumour tissues

Cell lines:

MCF-10a; MCF-7; BT474; MDA-MB-231; SKBr-3

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: miR-198
Biological function: promotes proliferation, migration and colony formation of breast cancer cells; promotes tumor growth in vivo
Molecular mechanism: acts as a competing endogenous RNA to sponge miR-198
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); migration (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Sanger Sequencing; Actinomycin D / DRB Stability Assay; FISH / smFISH; RNase R Treatment; Bioinformatics Analysis; Luciferase Reporter Assay; RNA Pull-Down; Transfection; MTT; Transwell Assay; Wound Healing Assay; Colony Formation Assay; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

potential biomarker as a diagnostic and therapeutic target

Description:

circPTCD3 (hsa_circ_0055478), derived from PTCD3 exons 3-9, is up-regulated in breast cancer tissues and cell lines and mainly localizes to the cytoplasm. It promotes breast cancer cell proliferation and migration and enhances xenograft tumor growth by acting as a ceRNA that sponges miR-198.

Confidence score:

0.8275

Other information
Title:

A Novel Circular RNA circPTCD3 Promotes Breast Cancer Progression Through Sponging miR-198.

Journal: Cancer management and research
Published: 2021
PubMed ID: 34785951
Study type:

combined biological and clinical study

Data availability: -
Code availability: -