circRNA basic information
circBase ID: hsa_circ_0005556
Name: hsa_circ_NBAS
Synonym: -
Host Gene: NBAS
Genomic location(hg19): chr2:15693549-15698758:-
Genomic location(hg38): chr2:15553425-15558634:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: Gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; adjacent normal tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: miR-548c-3p, miR-587, miR-4739, miR-125a-3p, miR-297
Biological function: unknown
Molecular mechanism: Predicted ceRNA/miRNA sponge mechanism (not experimentally validated).
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
Validation methods:

divergent primers PCR; RT-qPCR; Sanger Sequencing; Clinical Sample Validation; ROC Analysis; Survival Analysis

Clinical significance:

Diagnostic biomarker potential (AUC 0.773; 64% sensitivity; 82% specificity) and prognostic association (high expression associated with longer OS); associated with differentiation, TNM stage and lymphatic metastasis.

Description:

hsa_circ_0005556 is significantly down-regulated in gastric cancer tissues and shows diagnostic potential (ROC AUC 0.773). Higher tumor hsa_circ_0005556 levels are associated with longer overall survival, and its expression correlates with differentiation, TNM stage, and lymphatic metastasis. A miRNA-sponge (ceRNA) role is proposed based on bioinformatic prediction but not experimentally validated.

Confidence score:

0.6355

Other information
Title:

Downregulated Expression of hsa_circ_0005556 in Gastric Cancer and Its Clinical Significance.

Journal: Disease markers
Published: 2019
PubMed ID: 31827632
Study type:

combined biological and clinical study

Data availability: GSE89143
Code availability: -